Burkholderia cenocepacia K56-2

Strain Overview
Organism Name Burkholderia cenocepacia K56-2
Species Burkholderia cenocepacia
Strain K56-2
Description/Title General Sample for Burkholderia cenocepacia
Annotated Genes 6907
Partial Genes 55
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Location Name Canada: Toronto
Isolation Source sputum
Sample Provider
Name Silvia Cardona
E-mail cardona@cc.umanitoba.ca
Institution The J. Craig Venter Institute
Date Collected 1999

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 227
gltB
11
gyrB
9
lepA
11
phaC
6
trpB
12
atpD
22
recA
14
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 17
Contig N50 1533453
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02045905
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6907
CDS 6809
pseudo 102
tRNA 69
rRNA 27
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2982
Cytoplasmic Membrane 1466
Periplasmic 232
Outer Membrane 156
Extracellular 94
Unknown 1917
Unknown (This protein may have multiple localization sites) 194
Flagellar 14
Fimbrial 4
T3SS 1

Replicons

17 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF