Burkholderia pseudomallei 668

Strain Overview
Organism Name Burkholderia pseudomallei 668
Species Burkholderia pseudomallei
Strain 668
Description/Title Sample from Burkholderia pseudomallei 668
Annotated Genes 6075
Partial Genes
Host Information
Host Species Taxonomic Name
Geographic Location
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution NCBI
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei 129
lipA
1
ace
1
gmhD
13
gltB
15
ndh
1
lepA
2
narK
22
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604035
NCBI Taxonomy ID 320373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia pseudomallei 668 chromosome I, complete sequence.
Burkholderia pseudomallei 668 chromosome II, complete sequence.

Annotated Features

Feature Count
gene 7195
CDS 7097
tRNA 59
pseudo 20
rRNA 12

Subcellular Localization

Localization Count
Cytoplasmic 2506
Cytoplasmic Membrane 1225
Periplasmic 196
Outer Membrane 139
Extracellular 100
Unknown 2970
Unknown (This protein may have multiple localization sites) 172
Flagellar 43
Fimbrial 8
Host Associated 3
T3SS 6

Breakdown by COG Category

Feature Count
General function prediction only 516
Amino acid transport and metabolism 476
Function unknown 453
Transcription 425
Cell wall/membrane/envelope biogenesis 333
Energy production and conversion 314
Carbohydrate transport and metabolism 298
Signal transduction mechanisms 252
Inorganic ion transport and metabolism 248
Lipid transport and metabolism 242
Coenzyme transport and metabolism 199
Secondary metabolites biosynthesis, transport and catabolism 197
Translation, ribosomal structure and biogenesis 189
Intracellular trafficking, secretion, and vesicular transport 187
Posttranslational modification, protein turnover, chaperones 169
Cell motility 165
Replication, recombination and repair 146
Nucleotide transport and metabolism 94
Defense mechanisms 59
Cell cycle control, cell division, chromosome partitioning 30
Chromatin structure and dynamics 5
Extracellular structures 3
RNA processing and modification 1

Replicons

Name Length GC
Burkholderia pseudomallei 668 chromosome I, complete sequence. 3912947 bp 68.0%
Replicon details
Burkholderia pseudomallei 668 chromosome II, complete sequence. 3127456 bp 68.6%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF