| Strain Overview | |
|---|---|
| Organism Name | Burkholderia multivorans ATCC 17616 - Assembly GCF_000018505.1 |
| Species | Burkholderia multivorans |
| Strain | ATCC 17616 |
| Description/Title | Sample of BURKHOLDERIA MULTIVORANS ATCC 17616 |
| Annotated Genes | 6346 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Isolation Source | soil |
| Environmental Material (?) | soil |
| Sample Provider | |
|---|---|
| Name | |
| Institution | Joint Genome Institute, U.S. Department of Energy |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 21 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN00623032 |
| NCBI Taxonomy ID | 395019 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6372 |
| CDS | 6253 |
| tRNA | 65 |
| rRNA | 15 |
| pseudo | 12 |
| ncRNA | 2 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2795 |
| Cytoplasmic Membrane | 1338 |
| Periplasmic | 210 |
| Outer Membrane | 145 |
| Extracellular | 72 |
| Unknown | 1849 |
| Unknown (This protein may have multiple localization sites) | 187 |
| Flagellar | 17 |
| Fimbrial | 6 |
| T3SS | 2 |
| Feature | Count |
|---|---|
| General function prediction only | 590 |
| Transcription | 544 |
| Amino acid transport and metabolism | 529 |
| Function unknown | 480 |
| Energy production and conversion | 369 |
| Carbohydrate transport and metabolism | 357 |
| Cell wall/membrane/envelope biogenesis | 343 |
| Inorganic ion transport and metabolism | 279 |
| Replication, recombination and repair | 272 |
| Signal transduction mechanisms | 266 |
| Lipid transport and metabolism | 221 |
| Coenzyme transport and metabolism | 211 |
| Translation, ribosomal structure and biogenesis | 184 |
| Posttranslational modification, protein turnover, chaperones | 169 |
| Secondary metabolites biosynthesis, transport and catabolism | 160 |
| Intracellular trafficking, secretion, and vesicular transport | 152 |
| Nucleotide transport and metabolism | 103 |
| Cell motility | 103 |
| Defense mechanisms | 60 |
| Cell cycle control, cell division, chromosome partitioning | 39 |
| Chromatin structure and dynamics | 3 |
| RNA processing and modification | 1 |
| Extracellular structures | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia multivorans ATCC 17616 chromosome 1, complete sequence. | 3448466 bp | 66.9% |
Replicon details
|
| Burkholderia multivorans ATCC 17616 chromosome 2, complete sequence. | 2472928 bp | 67.1% |
Replicon details
|
| Burkholderia multivorans ATCC 17616 chromosome 3, complete sequence. | 919806 bp | 65.8% |
Replicon details
|
| Burkholderia multivorans ATCC 17616 plasmid pBMUL01, complete sequence. | 167422 bp | 61.3% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |