| Strain Overview | |
|---|---|
| Organism Name | Burkholderia mallei SAVP1 |
| Species | Burkholderia mallei |
| Strain | SAVP1 |
| Description/Title | Sample from Burkholderia mallei SAVP1 |
| Annotated Genes | 5290 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | |
| johnston@ncbi.nlm.nih.gov | |
| Institution | NCBI |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02604034 |
| NCBI Taxonomy ID | 320388 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia mallei SAVP1 chromosome I, complete sequence. | |
| Burkholderia mallei SAVP1 chromosome II, complete sequence. |
| Feature | Count |
|---|---|
| gene | 5293 |
| CDS | 5187 |
| tRNA | 55 |
| pseudo | 40 |
| rRNA | 9 |
| ncRNA | 2 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2136 |
| Cytoplasmic Membrane | 913 |
| Periplasmic | 147 |
| Outer Membrane | 92 |
| Extracellular | 61 |
| Unknown | 1827 |
| Unknown (This protein may have multiple localization sites) | 129 |
| Flagellar | 21 |
| Fimbrial | 3 |
| Feature | Count |
|---|---|
| General function prediction only | 408 |
| Amino acid transport and metabolism | 373 |
| Function unknown | 345 |
| Transcription | 301 |
| Cell wall/membrane/envelope biogenesis | 260 |
| Energy production and conversion | 250 |
| Replication, recombination and repair | 244 |
| Carbohydrate transport and metabolism | 235 |
| Inorganic ion transport and metabolism | 206 |
| Lipid transport and metabolism | 184 |
| Signal transduction mechanisms | 175 |
| Translation, ribosomal structure and biogenesis | 175 |
| Coenzyme transport and metabolism | 171 |
| Posttranslational modification, protein turnover, chaperones | 145 |
| Secondary metabolites biosynthesis, transport and catabolism | 132 |
| Intracellular trafficking, secretion, and vesicular transport | 113 |
| Cell motility | 92 |
| Nucleotide transport and metabolism | 83 |
| Defense mechanisms | 42 |
| Cell cycle control, cell division, chromosome partitioning | 28 |
| Chromatin structure and dynamics | 5 |
| Extracellular structures | 2 |
| RNA processing and modification | 1 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia mallei SAVP1 chromosome I, complete sequence. | 3497479 bp | 68.1% |
Replicon details
|
| Burkholderia mallei SAVP1 chromosome II, complete sequence. | 1734922 bp | 68.9% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |