Burkholderia cenocepacia AU 1054

Strain Overview
Organism Name Burkholderia cenocepacia AU 1054
Species Burkholderia cenocepacia
Strain AU 1054
Description/Title Sample from Burkholderia cenocepacia AU 1054
Annotated Genes 6351
Partial Genes 15
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease cystic fibrosis
Geographic Location
Isolation Source blood
Sample Provider
Name
E-mail johnston@ncbi.nlm.nih.gov
Institution
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 122
lepA
93
gltB
134
gyrB
57
phaC
8
recA
15
atpD
23
trpB
14
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02598326
NCBI Taxonomy ID 331271
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence.
Burkholderia cenocepacia AU 1054 chromosome 3, complete sequence.

Annotated Features

Feature Count
gene 6351
CDS 6262
pseudo 100
tRNA 67
rRNA 18
misc_RNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2827
Cytoplasmic Membrane 1374
Periplasmic 209
Outer Membrane 146
Extracellular 77
Unknown 1467
Unknown (This protein may have multiple localization sites) 201
Flagellar 22
Fimbrial 2
T3SS 2

Replicons

Name Length GC
Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence. 3294563 bp 66.9%
Replicon details
Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence. 2788459 bp 66.9%
Replicon details
Burkholderia cenocepacia AU 1054 chromosome 3, complete sequence. 1196094 bp 67.0%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF