Motif View

Internal ID 1979715
Source Database TransTermHP TERM 344
Feature Type terminator
Name
Rho-independent transcription terminator TERM 344
Sequence GCCCCGGCCGCTCGCGCGCCGGGGC
Look for more occurrences
Start 1508842
End 1508866
Strand -
Genomic Context
Replicon Burkholderia dolosa AU0158 chromosome 2, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGGACGCAAAAAA(5' tail) GCCCCGG-CGC(5' stem) GCGA(loop) GCGGCCGGGGC(3' stem) CAACGGAACAACCAC(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685