Motif View

Internal ID 1818303
Source Database TransTermHP TERM 629
Feature Type terminator
Name
Rho-independent transcription terminator TERM 629
Sequence GCGCCCTTTGGGGCGC
Look for more occurrences
Start 2067485
End 2067500
Strand -
Genomic Context
Replicon Burkholderia glumae LMG 2196 = ATCC 33617 chromosome I, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGGAAAAAGAAAAA(5' tail) GCGCCC(5' stem) CAAA(loop) GGGCGC(3' stem) TTTTTCGTGCAGGTT(3' tail). Confidence: 100. opp_overlap 2067485, overlap 2067479

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685