Motif View

Internal ID 1787279
Source Database TransTermHP TERM 1017
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1017
Sequence CCCGGCGCAAATGCGCCGGG
Look for more occurrences
Start 2798130
End 2798149
Strand -
Genomic Context
Replicon Burkholderia cenocepacia H111 chromosome 1 complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TATCTGACGAAGAAA(5' tail) CCCGGCGC(5' stem) ATTT(loop) GCGCCGGG(3' stem) TTTCTTTTTTTGTGG(3' tail). Confidence: 100. opp_overlap 2798126, overlap 2798107 2798126

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685