Motif View

Internal ID 1761105
Source Database TransTermHP TERM 818
Feature Type terminator
Name
Rho-independent transcription terminator TERM 818
Sequence GCGCCACGAGGGCGC
Look for more occurrences
Start 2669687
End 2669701
Strand -
Genomic Context
Replicon Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCACCAAAGAAAAAA(5' tail) GCGCC(5' stem) CTCGT(loop) GGCGC(3' stem) TTTTCCGTTGGTGCA(3' tail). Confidence: 100. opp_overlap 2669687

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685