Motif View

Internal ID 1760173
Source Database TransTermHP TERM 60
Feature Type terminator
Name
Rho-independent transcription terminator TERM 60
Sequence GCCCTCATGCGGTGTCGTGCTGCATGGGGGC
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Start 161986
End 162016
Strand +
Genomic Context
Replicon Burkholderia ambifaria AMMD chromosome 2, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCGTCGGGAAACGA(5' tail) GCCCTCATGCGGTG(5' stem) TCG(loop) TGCTGCATGGGGGC(3' stem) TTTGCTTTTGGGCGC(3' tail). Confidence: 93. opp_overlap 161986 161983

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685