Burkholderia cenocepacia J2315, BCAM2054 (bcscD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Burkholderia cenocepacia J2315
GCF_000009485.1|latest
Locus Tag
BCAM2054
NCBI Locus TagQU43_RS64630
Name
bcscD
Replicon chromosome 2
Genomic location 2284368 - 2285711 (- strand)

Cross-References

RefSeq WP_006498991.1
GI 206563895
Entrez 6929669
GI 206563895
INSDC CAR55913.1
NCBI Locus Tag QU43_RS64630
NCBI Old Locus Tag BCAM2054
RefSeq WP_006498991.1,GeneID
UniParc UPI00017B9E8A
UniProtKB Acc B4EN97
UniProtKB ID B4EN97_BURCJ
UniRef100 UniRef100_B4EN97
UniRef50 UniRef50_B4EN97
UniRef90 UniRef90_B4EN97

Product

Feature Type CDS
Coding Frame 1
Product Name
type III secretion system protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.16
Kyte-Doolittle Hydrophobicity Value 0.047
Molecular Weight (kDa) 46318.0
Isoelectric Point (pI) 5.88

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 4 genera

Orthologs/Comparative Genomics

Burkholderia Ortholog Group BG003801 (246 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: BCAM2054
Search term: bcscD

References

A putative type III secretion gene cluster is widely distributed in the Burkholderia cepacia complex but absent from genomovar I.
Parsons YN, Glendinning KJ, Thornton V, Hales BA, Hart CA, Winstanley C
FEMS Microbiol Lett 2001 Sep 11;203(1):103-8
PubMed ID: 11557147
Sequence divergence in type III secretion gene clusters of the Burkholderia cepacia complex.
Glendinning KJ, Parsons YN, Duangsonk K, Hales BA, Humphreys D, Hart CA, Winstanley C
FEMS Microbiol Lett 2004 Jun 15;235(2):229-35
PubMed ID: 15183868