Strain |
Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
GCF_000011545.1|latest |
Locus Tag |
BPSL1518
|
Name |
hfq
|
Replicon | chromosome 1 |
Genomic location | 1757798 - 1758037 (+ strand) |
RefSeq | YP_108138.1 |
GI | 53719152 |
Entrez | 3092453 |
GI | 53719152 |
INSDC | CAH35519.1 |
NCBI Locus Tag | BPSL1518 |
RefSeq | YP_108138.1,GeneID |
UniParc | UPI000043B02F |
UniProtKB Acc | Q63US8 |
UniProtKB ID | HFQ_BURPS |
UniRef100 | UniRef100_A3MK69 |
UniRef50 | UniRef50_Q0C0N8 |
UniRef90 | UniRef90_A3MK69 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
RNA-binding protein Hfq
|
Synonyms | |
Evidence for Translation |
Detected in B. pseudomallei strain DD503 using trypsin shaving and mass spectrometry (PMID:21391724).
|
Charge (pH 7) | 1.70 |
Kyte-Doolittle Hydrophobicity Value | -0.051 |
Molecular Weight (kDa) | 8833.1 |
Isoelectric Point (pI) | 9.01 |
Individual Mappings | |
Additional evidence for subcellular localization |
Detected in Triton-insoluble fraction of lysozyme-treated B. pseudomallei DD503 cells using trypsin shaving and mass spectrometry (PMID:21391724).
|
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
3SB2 | CHAPERONE | 06/03/11 | Crystal Structure of the RNA chaperone Hfq from Herbaspirillum seropedicae SMR1 | HERBASPIRILLUM SEROPEDICAE | 2.6301 | X-RAY DIFFRACTION | 95.7 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 282 genera
|
Burkholderia Ortholog Group |
BG001644 (652 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: BPSL1518
Search term: hfq
Search term: RNA-binding protein Hfq
|
Quantitative proteomic analysis of Burkholderia pseudomallei Bsa type III secretion system effectors using hypersecreting mutants.
Vander Broek CW, Chalmers KJ, Stevens MP, Stevens JM
Mol Cell Proteomics 2015 Apr;14(4):905-16
PubMed ID: 25635268
|