Burkholderia pseudomallei K96243

Strain Overview
Organism Name Burkholderia pseudomallei K96243 - Assembly GCF_000011545.1
Species Burkholderia pseudomallei
Strain K96243
Subspecific Genetic Lineage
Description/Title DNA sample from a human female participant in the dbGaP study "Framingham SHARe Peri-Aortic Fat"
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 5935
References
Partial Genes
Cross-References
NCBI BioSample Accession SAMEA1705938
NCBI Biosample ID 25428
NCBI Taxonomy ID 9606
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 5935
CDS 5727
pseudo 127
tRNA 61
rRNA 12
misc_RNA 8

Subcellular Localization

Localization Count
Cytoplasmic 2531
Cytoplasmic Membrane 1208
Periplasmic 201
Outer Membrane 141
Extracellular 505
Unknown 1508
Unknown (This protein may have multiple localization sites) 167
Flagellar 27
Fimbrial 9
Host Associated 2
T3SS 5
S-layer 2

Breakdown by COG Category

Feature Count
General function prediction only 538
Amino acid transport and metabolism 474
Function unknown 466
Transcription 435
Cell wall/membrane/envelope biogenesis 337
Energy production and conversion 315
Carbohydrate transport and metabolism 304
Inorganic ion transport and metabolism 249
Lipid transport and metabolism 244
Signal transduction mechanisms 239
Secondary metabolites biosynthesis, transport and catabolism 204
Coenzyme transport and metabolism 197
Translation, ribosomal structure and biogenesis 190
Intracellular trafficking, secretion, and vesicular transport 180
Posttranslational modification, protein turnover, chaperones 169
Replication, recombination and repair 154
Cell motility 132
Nucleotide transport and metabolism 94
Defense mechanisms 62
Cell cycle control, cell division, chromosome partitioning 34
Chromatin structure and dynamics 5
Extracellular structures 2
RNA processing and modification 1
Sample Provider
Name
E-mail
Institution European Bioinformatics Institute
Date Collected 1996
Geographic Location
Host Information
Host Species Taxonomic Name

Replicons

Name Length GC
Burkholderia pseudomallei K96243 chromosome 1, complete sequence. 4074542 bp 67.7%
Replicon details
Burkholderia pseudomallei K96243 chromosome 2, complete sequence. 3173005 bp 68.5%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

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TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs

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File also contains gene annotations

GTF