Burkholderia cenocepacia J2315, BCAM1804

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Biological Process	GO:0006935	chemotaxis	ISM Inferred from Sequence Model Term mapped from: InterPro:PF02203	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004888	transmembrane signaling receptor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00260	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016020	membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:PS50111	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0007165	signal transduction	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00304	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Cellular Component	GO:0016021	integral component of membrane	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00304	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bcj02030	Bacterial chemotaxis	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	bcj02020	Two-component system	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
ProSiteProfiles	PS50885	HAMP domain profile.	IPR003660	HAMP domain	217	269	9.513
CDD	cd06225	HAMP	IPR003660	HAMP domain	219	266	1.12376E-5
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	291	320	4.5E-59
ProSiteProfiles	PS50111	Bacterial chemotaxis sensory transducers domain profile.	IPR004089	Methyl-accepting chemotaxis protein (MCP) signalling domain	274	503	49.475
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	397	426	4.5E-59
ProSitePatterns	PS00538	Bacterial chemotaxis sensory transducers signature.	IPR004091	Chemotaxis methyl-accepting receptor, methyl-accepting site	295	317	-
Gene3D	G3DSA:1.10.287.950				217	519	1.8E-89
Pfam	PF02203	Tar ligand binding domain homologue	IPR003122	Chemotaxis methyl-accepting receptor Tar-related, ligand-binding	7	178	3.7E-49
CDD	cd11386	MCP_signal			297	488	1.94184E-55
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	445	474	4.5E-59
Coils	Coil				293	313	-
Pfam	PF00015	Methyl-accepting chemotaxis protein (MCP) signalling domain	IPR004089	Methyl-accepting chemotaxis protein (MCP) signalling domain	330	485	4.2E-51
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	10	35	4.5E-59
SUPERFAMILY	SSF47170		IPR035440	Methyl-accepting chemotaxis protein, four helix bundle domain superfamily	31	151	1.96E-9
SUPERFAMILY	SSF58104				237	518	2.49E-71
SMART	SM00304		IPR003660	HAMP domain	217	269	1.0E-7
Pfam	PF00672	HAMP domain	IPR003660	HAMP domain	218	265	4.5E-7
Coils	Coil				474	512	-
CDD	cd00181	Tar_Tsr_LBD	IPR003122	Chemotaxis methyl-accepting receptor Tar-related, ligand-binding	50	175	1.20162E-13
PRINTS	PR00260	Bacterial chemotaxis sensory transducer signature	IPR004090	Chemotaxis methyl-accepting receptor	368	395	4.5E-59
SMART	SM00283		IPR004089	Methyl-accepting chemotaxis protein (MCP) signalling domain	270	517	1.9E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.