Burkholderia cenocepacia J2315, BCAM1572

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj02020 Two-component system 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG bcj02030 Bacterial chemotaxis 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.287.950 211 514 1.7E-87
Pfam PF00672 HAMP domain IPR003660 HAMP domain 209 259 6.4E-8
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 1 24 5.5E-59
MobiDBLite mobidb-lite consensus disorder prediction 516 539 -
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 440 469 5.5E-59
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 324 479 2.9E-49
ProSiteProfiles PS50111 Bacterial chemotaxis sensory transducers domain profile. IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 269 498 49.862
Coils Coil 80 114 -
SMART SM00304 IPR003660 HAMP domain 212 264 3.2E-7
SUPERFAMILY SSF58104 232 513 4.19E-72
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 363 390 5.5E-59
CDD cd11386 MCP_signal 292 483 8.6043E-52
CDD cd06225 HAMP IPR003660 HAMP domain 214 259 1.19069E-5
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 392 421 5.5E-59
Pfam PF12729 Four helix bundle sensory module for signal transduction IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain 1 172 4.5E-15
ProSiteProfiles PS50885 HAMP domain profile. IPR003660 HAMP domain 212 264 9.562
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 286 315 5.5E-59
SMART SM00283 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 265 512 3.4E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.