Burkholderia cenocepacia J2315, BCAM1424

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50111
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50111
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.287.950 348 658 6.1E-76
CDD cd12912 PDC2_MCP_like 222 315 2.10549E-10
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 470 622 3.6E-43
ProSiteProfiles PS50111 Bacterial chemotaxis sensory transducers domain profile. IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 413 642 44.194
Coils Coil 631 651 -
SMART SM00283 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 409 656 1.9E-78
SUPERFAMILY SSF58104 384 657 9.16E-63
SMART SM00304 IPR003660 HAMP domain 348 408 2.7E-6
SUPERFAMILY SSF103190 IPR029151 Periplasmic sensor-like domain superfamily 116 212 3.92E-13
Pfam PF00672 HAMP domain IPR003660 HAMP domain 346 398 8.2E-8
Gene3D G3DSA:3.30.450.20 185 328 1.0E-10
Pfam PF17201 Cache 3/Cache 2 fusion domain IPR033462 Cache 3/Cache 2 fusion domain 40 325 1.1E-80
ProSiteProfiles PS50885 HAMP domain profile. IPR003660 HAMP domain 348 408 8.648
CDD cd11386 MCP_signal 438 633 4.34725E-51

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.