Burkholderia cenocepacia J2315, BCAM0918 (sigE)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006352	DNA-templated transcription, initiation	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016987	sigma factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00140	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	434	442	3.2E-31
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	594	605	3.2E-31
ProSitePatterns	PS00715	Sigma-70 factors family signature 1.	IPR000943	RNA polymerase sigma-70	410	423	-
Pfam	PF03979	Sigma-70 factor, region 1.1	IPR007127	RNA polymerase sigma factor 70, region 1.1	2	77	2.1E-25
Coils	Coil				580	600	-
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	459	534	2.1E-29
Pfam	PF04539	Sigma-70 region 3	IPR007624	RNA polymerase sigma-70 region 3	465	541	2.0E-25
Pfam	PF04545	Sigma-70, region 4	IPR007630	RNA polymerase sigma-70 region 4	554	607	3.5E-19
TIGRFAM	TIGR02937	sigma70-ECF: RNA polymerase sigma factor, sigma-70 family	IPR014284	RNA polymerase sigma-70 like domain	382	607	2.4E-39
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	516	617	5.05E-28
Pfam	PF04546	Sigma-70, non-essential region	IPR007631	RNA polymerase sigma factor 70, non-essential domain	135	355	2.2E-67
Gene3D	G3DSA:1.10.601.10				109	455	5.7E-131
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	558	570	3.2E-31
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	410	423	3.2E-31
ProSitePatterns	PS00716	Sigma-70 factors family signature 2.	IPR000943	RNA polymerase sigma-70	579	605	-
MobiDBLite	mobidb-lite	consensus disorder prediction			184	207	-
SUPERFAMILY	SSF88946		IPR013325	RNA polymerase sigma factor, region 2	111	453	4.87E-101
MobiDBLite	mobidb-lite	consensus disorder prediction			183	211	-
Gene3D	G3DSA:1.10.220.120		IPR042189	Sigma-70 factor, region 1.1 superfamily	1	58	5.6E-24
SUPERFAMILY	SSF88659		IPR013324	RNA polymerase sigma factor, region 3/4-like	459	532	3.71E-18
Pfam	PF00140	Sigma-70 factor, region 1.2	IPR009042	RNA polymerase sigma-70 region 1.2	94	125	2.8E-13
Coils	Coil				273	293	-
Gene3D	G3DSA:1.10.10.10		IPR036388	Winged helix-like DNA-binding domain superfamily	536	620	3.7E-36
TIGRFAM	TIGR02393	RpoD_Cterm: RNA polymerase sigma factor RpoD	IPR012760	RNA polymerase sigma factor RpoD, C-terminal	382	618	4.3E-119
Hamap	MF_00963	RNA polymerase sigma factor RpoD [rpoD].	IPR028630	RNA polymerase sigma factor RpoD	2	619	42.311
Coils	Coil				365	392	-
PRINTS	PR00046	Major sigma-70 factor signature	IPR000943	RNA polymerase sigma-70	579	594	3.2E-31
Pfam	PF04542	Sigma-70 region 2	IPR007627	RNA polymerase sigma-70 region 2	388	455	7.0E-21
CDD	cd06171	Sigma70_r4			548	606	9.9211E-14
Coils	Coil				178	205	-

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.