Burkholderia cenocepacia J2315, BCAL3030 (serS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006418 tRNA aminoacylation for protein translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00587
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00587
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006434 seryl-tRNA aminoacylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004828 serine-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00414
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG (InterPro) 00970 Aminoacyl-tRNA biosynthesis InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion
KEGG bcj00970 Aminoacyl-tRNA biosynthesis 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion
MetaCyc L-selenocysteine biosynthesis II (archaea and eukaryotes) InterPro 5.36-75.0 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 268 280 3.2E-32
Hamap MF_00176 Serine--tRNA ligase [serS]. IPR002317 Serine-tRNA ligase, type1 1 425 39.81
CDD cd00770 SerRS_core IPR033729 Serine-tRNA ligase catalytic core domain 119 420 1.88965E-179
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 280 293 3.2E-32
TIGRFAM TIGR00414 serS: serine--tRNA ligase IPR002317 Serine-tRNA ligase, type1 1 420 3.7E-163
Gene3D G3DSA:1.10.287.40 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily 1 104 4.9E-24
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 355 371 3.2E-32
SUPERFAMILY SSF46589 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm 1 112 2.3E-30
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 320 333 3.2E-32
Gene3D G3DSA:3.30.930.10 105 431 1.8E-117
Pfam PF02403 Seryl-tRNA synthetase N-terminal domain IPR015866 Serine-tRNA synthetase, type1, N-terminal 1 106 9.4E-32
SUPERFAMILY SSF55681 116 421 1.82E-99
PRINTS PR00981 Seryl-tRNA synthetase signature IPR002317 Serine-tRNA ligase, type1 337 353 3.2E-32
PIRSF PIRSF001529 IPR002317 Serine-tRNA ligase, type1 1 429 3.0E-182
ProSiteProfiles PS50862 Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195 Aminoacyl-tRNA synthetase, class II 170 413 25.19
Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) 224 403 4.4E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.