Burkholderia cenocepacia J2315, BCAL2859

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50110
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50045
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.50.2300 2 136 1.8E-29
Gene3D G3DSA:3.40.50.300 137 319 4.9E-53
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 441 461 9.7E-7
SMART SM00448 IPR001789 Signal transduction response regulator, receiver domain 2 115 6.2E-31
ProSiteProfiles PS50110 Response regulatory domain profile. IPR001789 Signal transduction response regulator, receiver domain 3 119 37.94
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 418 457 1.2E-10
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 144 315 3.3E-51
Gene3D G3DSA:1.10.8.60 320 390 1.4E-9
SMART SM00382 IPR003593 AAA+ ATPase domain 164 312 5.0E-7
CDD cd00009 AAA 168 292 1.20571E-14
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 5 114 1.9E-23
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 144 383 48.057
Gene3D G3DSA:1.10.10.60 416 457 3.1E-10
SUPERFAMILY SSF52172 IPR011006 CheY-like superfamily 1 188 4.41E-39
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 424 441 9.7E-7
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 367 460 2.57E-13
CDD cd00156 REC IPR001789 Signal transduction response regulator, receiver domain 5 118 7.98751E-30
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 144 384 5.52E-50

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.