Burkholderia cenocepacia J2315, BCAL2408 (msbA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009244 lipopolysaccharide core region biosynthetic process
IGC
Inferred from Genomic Context 		ECO:0000317
genomic context evidence used in manual assertion		 19525227 Reviewed by curator
Biological Process GO:0009244 lipopolysaccharide core region biosynthetic process
IGC
Inferred from Genomic Context 		ECO:0000177
genomic context evidence
Molecular Function GO:0042626 ATPase-coupled transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00664
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.1560.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50893
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0034040 ATPase-coupled lipid transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS51239
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016021 integral component of membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:1.20.1560.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00664
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj02010 ABC transporters 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 344 590 1.07E-90
ProSiteProfiles PS51239 Lipid A export ATP-binding/permease protein msbA family profile. IPR011917 ABC transporter, lipid A export, MsbA 18 590 172.73
Gene3D G3DSA:3.40.50.300 344 594 4.2E-92
Pfam PF00664 ABC transporter transmembrane region IPR011527 ABC transporter type 1, transmembrane domain 39 309 1.3E-43
SUPERFAMILY SSF90123 IPR036640 ABC transporter type 1, transmembrane domain superfamily 24 339 9.16E-74
Coils Coil 193 220 -
SMART SM00382 IPR003593 AAA+ ATPase domain 380 565 2.4E-21
CDD cd18552 ABC_6TM_MsbA_like 37 329 2.50792E-97
TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA IPR011917 ABC transporter, lipid A export, MsbA 24 592 2.2E-237
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile. IPR003439 ABC transporter-like 353 588 25.85
Gene3D G3DSA:1.20.1560.10 IPR036640 ABC transporter type 1, transmembrane domain superfamily 7 340 4.5E-73
Pfam PF00005 ABC transporter IPR003439 ABC transporter-like 371 519 7.3E-33
ProSitePatterns PS00211 ABC transporters family signature. IPR017871 ABC transporter, conserved site 491 505 -
ProSiteProfiles PS50929 ABC transporter integral membrane type-1 fused domain profile. IPR011527 ABC transporter type 1, transmembrane domain 38 321 49.128

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.