Burkholderia cenocepacia J2315, BCAL1058

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00032
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00032
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 242 319 2.3E-24
Gene3D G3DSA:3.40.50.880 IPR029062 Class I glutamine amidotransferase-like 8 207 3.9E-36
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 222 320 30.859
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 235 318 5.4E-31
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 287 302 5.1E-6
MobiDBLite mobidb-lite consensus disorder prediction 321 343 -
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 302 318 5.1E-6
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 271 321 7.17E-12
ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. IPR018062 HTH domain AraC-type, conserved site 272 314 -
CDD cd03136 GATase1_AraC_ArgR_like 13 197 3.98523E-71
SUPERFAMILY SSF52317 IPR029062 Class I glutamine amidotransferase-like 12 196 5.95E-31
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 218 269 6.0E-9
Gene3D G3DSA:1.10.10.60 215 322 1.3E-34

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.