Burkholderia cenocepacia J2315, BCAL1029

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 8 67 4.6E-16
CDD cd08473 PBP2_CrgA_like_4 94 295 8.50607E-96
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 92 299 8.8E-36
SUPERFAMILY SSF53850 93 302 3.26E-38
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 7 87 9.98E-20
Gene3D G3DSA:3.40.190.10 96 297 4.4E-56
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 6 63 20.286
Gene3D G3DSA:3.40.190.10 169 270 4.4E-56
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 7 95 5.2E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.