Burkholderia cenocepacia J2315, BCAL0982 (rne2)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00757
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008995 ribonuclease E activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_00970
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004540 ribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00757
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006396 RNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00757
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03018 RNA degradation 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
MobiDBLite mobidb-lite consensus disorder prediction 511 554 -
Hamap MF_00970 Ribonuclease E [rne]. IPR028878 Ribonuclease E 1 1037 36.859
Gene3D G3DSA:2.40.50.140 31 124 1.5E-31
MobiDBLite mobidb-lite consensus disorder prediction 597 618 -
MobiDBLite mobidb-lite consensus disorder prediction 511 528 -
MobiDBLite mobidb-lite consensus disorder prediction 540 554 -
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 36 117 4.5E-11
MobiDBLite mobidb-lite consensus disorder prediction 1019 1054 -
Pfam PF10150 Ribonuclease E/G family IPR019307 RNA-binding protein AU-1/Ribonuclease E/G 120 391 1.9E-93
Gene3D G3DSA:3.40.1260.20 401 510 1.7E-37
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 39 124 4.61E-18
MobiDBLite mobidb-lite consensus disorder prediction 587 827 -
TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family IPR004659 Ribonuclease E/G 13 425 1.8E-159
MobiDBLite mobidb-lite consensus disorder prediction 641 749 -
ProSiteProfiles PS50126 S1 domain profile. IPR003029 S1 domain 39 118 12.619
SMART SM00316 IPR022967 RNA-binding domain, S1 37 118 8.6E-10
Coils Coil 350 370 -
CDD cd04453 S1_RNase_E 32 124 1.51469E-35

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.