Burkholderia cenocepacia J2315, BCAL0933 (rhlE1)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005524	ATP binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003724	RNA helicase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0042255	ribosome assembly	ISM Inferred from Sequence Model Term mapped from: InterPro:MF_00968	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF00270	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	bcj03018	RNA degradation	73.0+/03-31, Mar 15	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF52540		IPR027417	P-loop containing nucleoside triphosphate hydrolase	77	362	5.94E-76
ProSitePatterns	PS00039	DEAD-box subfamily ATP-dependent helicases signature.	IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site	155	163	-
Gene3D	G3DSA:3.40.50.300				216	396	1.7E-50
CDD	cd18787	SF2_C_DEAD			221	350	1.0121E-60
Gene3D	G3DSA:3.40.50.300				1	212	2.7E-78
ProSiteProfiles	PS51194	Superfamilies 1 and 2 helicase C-terminal domain profile.	IPR001650	Helicase, C-terminal	232	381	22.285
MobiDBLite	mobidb-lite	consensus disorder prediction			375	477	-
SMART	SM00487		IPR014001	Helicase superfamily 1/2, ATP-binding domain	20	224	1.5E-60
CDD	cd00268	DEADc			12	210	2.41374E-103
ProSiteProfiles	PS51192	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	IPR014001	Helicase superfamily 1/2, ATP-binding domain	32	209	32.559
Pfam	PF00270	DEAD/DEAH box helicase	IPR011545	DEAD/DEAH box helicase domain	25	197	2.0E-51
SMART	SM00490		IPR001650	Helicase, C-terminal	260	341	8.7E-33
ProSiteProfiles	PS51195	DEAD-box RNA helicase Q motif profile.	IPR014014	RNA helicase, DEAD-box type, Q motif	1	29	12.392
Pfam	PF00271	Helicase conserved C-terminal domain	IPR001650	Helicase, C-terminal	235	341	4.1E-27
Hamap	MF_00968	ATP-dependent RNA helicase RhlE [rhlE].	IPR028622	ATP-dependent RNA helicase RhlE	1	473	52.526
SUPERFAMILY	SSF52540		IPR027417	P-loop containing nucleoside triphosphate hydrolase	24	104	3.72E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.