Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Cellular Component | GO:0005737 | cytoplasm |
Inferred from Sequence Model
Term mapped from: InterPro:PS01326
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0008837 | diaminopimelate epimerase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00652
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0009089 | lysine biosynthetic process via diaminopimelate |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00652
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | bcj01230 | Biosynthesis of amino acids | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | bcj01110 | Biosynthesis of secondary metabolites | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG (InterPro) | 00300 | Lysine biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
MetaCyc | L-lysine biosynthesis VI | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
KEGG | bcj01100 | Metabolic pathways | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
MetaCyc | L-lysine biosynthesis II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
KEGG | bcj01120 | Microbial metabolism in diverse environments | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | bcj01130 | Biosynthesis of antibiotics | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
KEGG | bcj00300 | Lysine biosynthesis | 73.0+/03-31, Mar 15 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
Gene3D | G3DSA:3.10.310.10 | 25 | 303 | 1.6E-95 | |||
SUPERFAMILY | SSF54506 | 23 | 307 | 1.02E-51 | |||
Pfam | PF01678 | Diaminopimelate epimerase | IPR001653 | Diaminopimelate epimerase, DapF | 25 | 146 | 1.1E-32 |
Gene3D | G3DSA:3.10.310.10 | 142 | 300 | 1.6E-95 | |||
ProSitePatterns | PS01326 | Diaminopimelate epimerase signature. | IPR018510 | Diaminopimelate epimerase, active site | 87 | 101 | - |
Hamap | MF_00197 | Diaminopimelate epimerase [dapF]. | IPR001653 | Diaminopimelate epimerase, DapF | 23 | 307 | 38.175 |
TIGRFAM | TIGR00652 | DapF: diaminopimelate epimerase | IPR001653 | Diaminopimelate epimerase, DapF | 24 | 305 | 3.4E-86 |
Pfam | PF01678 | Diaminopimelate epimerase | IPR001653 | Diaminopimelate epimerase, DapF | 182 | 299 | 2.3E-27 |