Burkholderia cenocepacia J2315, BCAL0257 (rpsM)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46946
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01315
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03010 Ribosome 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PIRSF PIRSF002134 IPR001892 Ribosomal protein S13 1 121 1.9E-43
Gene3D G3DSA:4.10.910.10 IPR027437 30s ribosomal protein S13, C-terminal 72 117 5.5E-25
TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 IPR019980 Ribosomal protein S13, bacterial-type 3 114 3.8E-53
ProSiteProfiles PS50159 Ribosomal protein S13 family profile. IPR001892 Ribosomal protein S13 4 111 38.754
SUPERFAMILY SSF46946 IPR010979 Ribosomal protein S13-like, H2TH 2 114 2.69E-45
ProSitePatterns PS00646 Ribosomal protein S13 signature. IPR018269 Ribosomal protein S13, conserved site 87 100 -
Hamap MF_01315 30S ribosomal protein S13 [rpsM]. IPR001892 Ribosomal protein S13 1 118 27.092
Pfam PF00416 Ribosomal protein S13/S18 IPR001892 Ribosomal protein S13 3 108 3.6E-32
MobiDBLite mobidb-lite consensus disorder prediction 92 121 -
Gene3D G3DSA:1.10.8.50 1 71 7.5E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.