Burkholderia cenocepacia J2315, BCAL0251 (rpsE)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0015935 small ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01021
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00333
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01021
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00333
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01021
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03010 Ribosome 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF54211 IPR020568 Ribosomal protein S5 domain 2-type fold 85 165 1.95E-25
Gene3D G3DSA:3.30.160.20 7 78 3.8E-27
Pfam PF00333 Ribosomal protein S5, N-terminal domain IPR013810 Ribosomal protein S5, N-terminal 17 81 6.0E-27
Pfam PF03719 Ribosomal protein S5, C-terminal domain IPR005324 Ribosomal protein S5, C-terminal 92 163 1.1E-28
SUPERFAMILY SSF54768 13 82 2.3E-22
ProSitePatterns PS00585 Ribosomal protein S5 signature. IPR018192 Ribosomal protein S5, N-terminal, conserved site 34 66 -
Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. IPR005712 Ribosomal protein S5, bacterial-type 1 169 34.089
ProSiteProfiles PS50881 S5 double stranded RNA-binding domain profile. IPR013810 Ribosomal protein S5, N-terminal 17 80 24.445
Gene3D G3DSA:3.30.230.10 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup 80 172 3.8E-36
TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 IPR005712 Ribosomal protein S5, bacterial-type 16 169 2.6E-64

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.