Burkholderia cenocepacia J2315, BCAL0249 (rplF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0005840 ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56053
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56053
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56053
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0019843 rRNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF56053
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Pathways

Database Xref Pathway Version Evidence PMID
KEGG bcj03010 Ribosome 73.0+/03-31, Mar 15 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Ribosomal protein L6, bacterial-type 140 161 5.3E-33
Pfam PF00347 Ribosomal protein L6 IPR020040 Ribosomal protein L6, alpha-beta domain 13 81 5.2E-12
SUPERFAMILY SSF56053 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily 82 176 1.05E-36
SUPERFAMILY SSF56053 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily 1 81 3.91E-18
Pfam PF00347 Ribosomal protein L6 IPR020040 Ribosomal protein L6, alpha-beta domain 89 163 2.7E-20
ProSitePatterns PS00525 Ribosomal protein L6 signature 1. IPR002358 Ribosomal protein L6, conserved site 153 161 -
Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. IPR019906 Ribosomal protein L6, bacterial-type 1 175 35.893
PIRSF PIRSF002162 IPR000702 Ribosomal protein L6 5 176 1.7E-45
Gene3D G3DSA:3.90.930.12 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily 82 176 4.5E-40
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Ribosomal protein L6, bacterial-type 70 95 5.3E-33
TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 IPR019906 Ribosomal protein L6, bacterial-type 2 175 1.3E-70
PRINTS PR00059 Ribosomal protein L6 signature IPR019906 Ribosomal protein L6, bacterial-type 98 114 5.3E-33
Gene3D G3DSA:3.90.930.12 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily 1 81 6.1E-22

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.