Burkholderia pseudomallei K96243, BPSS1755

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00140 Sigma-70 factor, region 1.2 IPR009042 RNA polymerase sigma-70 region 1.2 157 188 3.1E-13
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 638 653 4.8E-31
ProSitePatterns PS00715 Sigma-70 factors family signature 1. IPR000943 RNA polymerase sigma-70 469 482 -
CDD cd06171 Sigma70_r4 607 665 1.199E-13
TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family IPR014284 RNA polymerase sigma-70 like domain 441 666 2.9E-39
Pfam PF04546 Sigma-70, non-essential region IPR007631 RNA polymerase sigma factor 70, non-essential domain 198 414 5.9E-66
ProSitePatterns PS00716 Sigma-70 factors family signature 2. IPR000943 RNA polymerase sigma-70 638 664 -
MobiDBLite mobidb-lite consensus disorder prediction 239 266 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 469 482 4.8E-31
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 518 593 2.4E-29
MobiDBLite mobidb-lite consensus disorder prediction 28 44 -
Coils Coil 56 76 -
SUPERFAMILY SSF88946 IPR013325 RNA polymerase sigma factor, region 2 174 512 4.24E-100
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 613 666 4.0E-19
Gene3D G3DSA:1.10.220.120 IPR042189 Sigma-70 factor, region 1.1 superfamily 59 121 7.4E-25
TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD IPR012760 RNA polymerase sigma factor RpoD, C-terminal 441 677 5.2E-119
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 575 676 5.79E-28
SUPERFAMILY SSF88659 IPR013324 RNA polymerase sigma factor, region 3/4-like 518 591 3.55E-18
Coils Coil 424 451 -
Coils Coil 332 352 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 617 629 4.8E-31
Coils Coil 674 680 -
MobiDBLite mobidb-lite consensus disorder prediction 1 56 -
MobiDBLite mobidb-lite consensus disorder prediction 224 268 -
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 447 514 7.9E-21
Pfam PF03979 Sigma-70 factor, region 1.1 IPR007127 RNA polymerase sigma factor 70, region 1.1 61 140 2.2E-26
Gene3D G3DSA:1.10.601.10 172 514 7.4E-131
Coils Coil 639 659 -
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 595 679 4.2E-36
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 493 501 4.8E-31
Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. IPR028630 RNA polymerase sigma factor RpoD 45 678 42.428
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 653 664 4.8E-31
Pfam PF04539 Sigma-70 region 3 IPR007624 RNA polymerase sigma-70 region 3 524 600 2.3E-25
Coils Coil 240 262 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.