Burkholderia cenocepacia AU 1054, BCEN_RS28760

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50931
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 4 63 3.8E-19
SUPERFAMILY SSF53850 90 300 2.71E-41
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 294 2.4E-39
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 3 111 8.39E-23
CDD cd08422 PBP2_CrgA_like 92 292 5.86916E-72
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 3 89 2.1E-27
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 59 23.761
Gene3D G3DSA:3.40.190.290 91 295 1.0E-60

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.