Burkholderia cenocepacia AU 1054, BCEN_RS26325

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. IPR025944 Sigma-54 interaction domain, conserved site 376 385 -
Gene3D G3DSA:1.10.10.60 444 495 2.5E-11
Gene3D G3DSA:1.10.8.60 333 409 5.4E-21
Pfam PF08448 PAS fold IPR013656 PAS fold-4 27 119 3.8E-8
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 15 118 5.14E-11
CDD cd00009 AAA 170 324 2.16645E-22
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 457 474 5.3E-5
SMART SM00382 IPR003593 AAA+ ATPase domain 181 326 2.0E-9
Gene3D G3DSA:3.40.50.300 147 332 4.7E-61
ProSiteProfiles PS50045 Sigma-54 interaction domain profile. IPR002078 RNA polymerase sigma factor 54 interaction domain 161 392 62.421
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 444 494 6.09E-11
Coils Coil 134 154 -
Gene3D G3DSA:3.30.450.20 13 119 3.7E-9
ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. IPR025662 Sigma-54 interaction domain, ATP-binding site 1 185 198 -
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 474 494 5.3E-5
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 162 329 2.2E-62
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 451 490 3.0E-8
SUPERFAMILY SSF52540 IPR027417 P-loop containing nucleoside triphosphate hydrolase 161 405 1.49E-64

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.