Burkholderia cenocepacia AU 1054, BCEN_RS13610

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF03118	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0003677	DNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:PF03118	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0046983	protein dimerization activity	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.30.1360.10	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006351	transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.30.1360.10	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Coils	Coil				323	325	-
Gene3D	G3DSA:1.10.150.20				242	325	1.6E-37
CDD	cd06928	RNAP_alpha_NTD			13	227	1.8324E-106
Hamap	MF_00059	DNA-directed RNA polymerase subunit alpha [rpoA].	IPR011773	DNA-directed RNA polymerase, alpha subunit	2	314	35.105
SUPERFAMILY	SSF56553		IPR036643	DNA-directed RNA polymerase, insert domain superfamily	50	174	3.79E-41
SUPERFAMILY	SSF55257		IPR036603	RNA polymerase, RBP11-like subunit	5	228	3.83E-31
Gene3D	G3DSA:3.30.1360.10		IPR036603	RNA polymerase, RBP11-like subunit	14	223	1.2E-80
Pfam	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain	IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	26	224	5.4E-22
SUPERFAMILY	SSF47789				248	320	5.23E-27
Pfam	PF01000	RNA polymerase Rpb3/RpoA insert domain	IPR011262	DNA-directed RNA polymerase, insert domain	61	150	2.8E-23
TIGRFAM	TIGR02027	rpoA: DNA-directed RNA polymerase, alpha subunit	IPR011773	DNA-directed RNA polymerase, alpha subunit	21	313	9.3E-106
Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	IPR011260	RNA polymerase, alpha subunit, C-terminal	248	305	9.3E-25
SMART	SM00662		IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	20	230	1.2E-92
Gene3D	G3DSA:2.170.120.12		IPR036643	DNA-directed RNA polymerase, insert domain superfamily	50	173	1.2E-80

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.