Burkholderia cenocepacia AU 1054, BCEN_RS12640

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00056
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 142 306 2.02678E-19
SUPERFAMILY SSF55945 23 121 3.45E-26
SMART SM01009 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 22 140 5.6E-48
SMART SM00478 IPR003265 HhH-GPD domain 150 309 6.3E-8
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 146 283 4.7E-8
Gene3D G3DSA:3.30.310.20 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily 22 140 1.1E-30
Gene3D G3DSA:1.10.1670.10 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal 260 313 9.6E-8
SUPERFAMILY SSF48150 IPR011257 DNA glycosylase 130 306 7.68E-40
Pfam PF06029 AlkA N-terminal domain IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 23 140 6.4E-32
Gene3D G3DSA:1.10.340.30 141 259 3.5E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.