Burkholderia cenocepacia AU 1054, BCEN_RS12620

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 88 282 3.0E-40
SUPERFAMILY SSF46785 IPR036390 Winged helix DNA-binding domain superfamily 3 102 1.87E-19
ProSiteProfiles PS50931 LysR-type HTH domain profile. IPR000847 Transcription regulator HTH, LysR 1 57 27.727
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 38 49 1.5E-7
Gene3D G3DSA:1.10.10.10 IPR036388 Winged helix-like DNA-binding domain superfamily 1 82 1.4E-20
Gene3D G3DSA:3.40.190.290 89 285 1.7E-41
CDD cd05466 PBP2_LTTR_substrate 91 282 2.18775E-44
SUPERFAMILY SSF53850 89 284 2.35E-39
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 17 28 1.5E-7
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 28 38 1.5E-7
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 2 60 5.1E-20
TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type 4 282 8.7E-128

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.