Burkholderia cenocepacia AU 1054, BCEN_RS12295
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0005737 | cytoplasm |
Inferred from Sequence Model
Term mapped from: InterPro:PS01326
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0008837 | diaminopimelate epimerase activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00197
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:0009089 | lysine biosynthetic process via diaminopimelate |
Inferred from Sequence Model
Term mapped from: InterPro:MF_00197
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | L-lysine biosynthesis VI | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG (InterPro) | 00300 | Lysine biosynthesis | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
|
| MetaCyc | L-lysine biosynthesis II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Hamap | MF_00197 | Diaminopimelate epimerase [dapF]. | IPR001653 | Diaminopimelate epimerase, DapF | 23 | 307 | 38.372 |
| Pfam | PF01678 | Diaminopimelate epimerase | IPR001653 | Diaminopimelate epimerase, DapF | 182 | 299 | 1.0E-27 |
| TIGRFAM | TIGR00652 | DapF: diaminopimelate epimerase | IPR001653 | Diaminopimelate epimerase, DapF | 24 | 305 | 5.1E-87 |
| Gene3D | G3DSA:3.10.310.10 | 25 | 303 | 9.7E-96 | |||
| ProSitePatterns | PS01326 | Diaminopimelate epimerase signature. | IPR018510 | Diaminopimelate epimerase, active site | 87 | 101 | - |
| SUPERFAMILY | SSF54506 | 23 | 307 | 1.36E-51 | |||
| Gene3D | G3DSA:3.10.310.10 | 142 | 300 | 9.7E-96 | |||
| Pfam | PF01678 | Diaminopimelate epimerase | IPR001653 | Diaminopimelate epimerase, DapF | 25 | 146 | 3.3E-32 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.