Burkholderia cenocepacia AU 1054, BCEN_RS12025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:2.60.120.10 | IPR014710 | RmlC-like jelly roll fold | 73 | 178 | 1.1E-19 | |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 224 | - | ||
| Pfam | PF13560 | Helix-turn-helix domain | 7 | 62 | 1.0E-7 | ||
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 9 | 66 | 2.40709E-10 |
| SUPERFAMILY | SSF51182 | IPR011051 | RmlC-like cupin domain superfamily | 59 | 185 | 3.06E-29 | |
| Gene3D | G3DSA:1.10.260.40 | 6 | 72 | 7.4E-13 | |||
| SMART | SM00530 | IPR001387 | Cro/C1-type helix-turn-helix domain | 11 | 66 | 1.8E-9 | |
| ProSiteProfiles | PS50943 | Cro/C1-type HTH domain profile. | IPR001387 | Cro/C1-type helix-turn-helix domain | 12 | 66 | 12.963 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 259 | - | ||
| SUPERFAMILY | SSF47413 | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 3 | 69 | 3.66E-13 | |
| Pfam | PF07883 | Cupin domain | IPR013096 | Cupin 2, conserved barrel | 112 | 177 | 9.8E-17 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.