Burkholderia cenocepacia AU 1054, BCEN_RS06645

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006269 DNA replication, synthesis of RNA primer
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01896
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003896 DNA primase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01896
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50160
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50160
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003910 DNA ligase (ATP) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50160
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PS50160
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01068 ATP dependent DNA ligase domain IPR012310 DNA ligase, ATP-dependent, central 282 455 8.7E-21
TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain IPR014146 DNA ligase D, ligase domain 270 584 2.7E-97
ProSiteProfiles PS50160 ATP-dependent DNA ligase family profile. IPR012310 DNA ligase, ATP-dependent, central 363 455 12.244
MobiDBLite mobidb-lite consensus disorder prediction 187 258 -
TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain IPR014144 DNA ligase D, 3'-phosphoesterase domain 29 183 5.2E-63
Pfam PF01896 DNA primase small subunit IPR002755 DNA primase, small subunit 764 885 2.3E-6
Gene3D G3DSA:2.40.50.140 457 586 1.4E-36
Gene3D G3DSA:3.30.470.30 293 412 1.5E-41
Pfam PF04679 ATP dependent DNA ligase C terminal region IPR012309 DNA ligase, ATP-dependent, C-terminal 474 578 3.0E-23
CDD cd07971 OBF_DNA_ligase_LigD 458 583 6.51226E-48
MobiDBLite mobidb-lite consensus disorder prediction 216 250 -
MobiDBLite mobidb-lite consensus disorder prediction 1 48 -
TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D IPR014143 DNA ligase D 279 919 2.4E-207
Pfam PF13298 DNA polymerase Ligase (LigD) IPR014144 DNA ligase D, 3'-phosphoesterase domain 57 164 2.5E-39
MobiDBLite mobidb-lite consensus disorder prediction 1 35 -
Gene3D G3DSA:3.90.920.30 653 935 3.0E-106
MobiDBLite mobidb-lite consensus disorder prediction 582 654 -
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 458 585 2.83E-26
CDD cd04862 PaeLigD_Pol_like IPR033651 LigD polymerase domain, PaeLigD-type 663 888 5.48779E-128
SUPERFAMILY SSF56091 252 456 2.59E-44
Gene3D G3DSA:3.30.1490.70 280 453 1.5E-41
TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain IPR014145 DNA ligase D, polymerase domain 646 888 1.9E-90
CDD cd07906 Adenylation_DNA_ligase_LigD_LigC 268 457 8.63487E-77

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.