Burkholderia cenocepacia AU 1054, BCEN_RS03700
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:SSF47413
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF47413 | IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | 19 | 90 | 1.81E-20 | |
| SMART | SM00530 | IPR001387 | Cro/C1-type helix-turn-helix domain | 32 | 88 | 6.4E-6 | |
| Gene3D | G3DSA:1.10.260.40 | 10 | 92 | 2.0E-25 | |||
| ProSiteProfiles | PS50943 | Cro/C1-type HTH domain profile. | IPR001387 | Cro/C1-type helix-turn-helix domain | 33 | 88 | 10.0 |
| Coils | Coil | 30 | 50 | - | |||
| CDD | cd00093 | HTH_XRE | IPR001387 | Cro/C1-type helix-turn-helix domain | 32 | 86 | 1.36512E-5 |
| Pfam | PF13744 | Helix-turn-helix domain | IPR039554 | HigA2-like, helix-turn-helix domain | 16 | 90 | 1.1E-22 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.