Burkholderia cenocepacia AU 1054, BCEN_RS03480

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 305 321 5.2E-6
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 238 321 5.4E-31
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 245 322 2.4E-24
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 225 323 30.859
ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. IPR018062 HTH domain AraC-type, conserved site 275 317 -
Gene3D G3DSA:1.10.10.60 218 325 1.4E-34
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 221 272 6.09E-9
SUPERFAMILY SSF52317 IPR029062 Class I glutamine amidotransferase-like 15 197 9.62E-31
CDD cd03136 GATase1_AraC_ArgR_like 16 197 6.61364E-71
MobiDBLite mobidb-lite consensus disorder prediction 320 346 -
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 290 305 5.2E-6
Gene3D G3DSA:3.40.50.880 IPR029062 Class I glutamine amidotransferase-like 11 210 1.3E-35
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 274 324 7.17E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.