Burkholderia cenocepacia AU 1054, BCEN_RS03050

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF46689
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 273 288 1.6E-5
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 288 304 1.6E-5
ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. IPR018062 HTH domain AraC-type, conserved site 259 300 -
SMART SM00342 IPR018060 DNA binding HTH domain, AraC-type 222 304 1.2E-27
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 229 305 3.7E-23
Gene3D G3DSA:2.60.120.10 IPR014710 RmlC-like jelly roll fold 25 97 4.3E-5
MobiDBLite mobidb-lite consensus disorder prediction 138 165 -
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 258 305 2.69E-10
Gene3D G3DSA:1.10.10.60 260 306 4.0E-12
SUPERFAMILY SSF46689 IPR009057 Homeobox-like domain superfamily 205 256 3.27E-9
ProSiteProfiles PS01124 Bacterial regulatory proteins, araC family DNA-binding domain profile. IPR018060 DNA binding HTH domain, AraC-type 209 306 25.3
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 20 143 2.6E-23
Gene3D G3DSA:1.10.10.60 206 259 3.7E-15
SUPERFAMILY SSF51215 IPR037923 Transcription regulator HTH-like 29 140 2.62E-23

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.