Strain Overview | |
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Organism Name | Burkholderia contaminans MS14 |
Species | Burkholderia contaminans |
Strain | MS14 |
Description/Title | MIGS Cultured Bacterial/Archaeal sample from Burkholderia contaminans |
Annotated Genes | 7476 |
Partial Genes | 74 |
Host Information |
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Geographic Location | |
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Location Name | USA |
Isolation Source | Soil |
Latitude/Longitude | 33.80 N 90.34 W |
Sample Provider | |
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Name | PENG DENG |
dengpeng@deng-peng.com | |
Institution | Mississippi state university |
Date Collected | 2005 |
Database | Scheme | Sequence Type | Alleles | |
---|---|---|---|---|
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03135394 |
NCBI Taxonomy ID | 488447 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 7476 |
CDS | 7390 |
pseudo | 100 |
tRNA | 69 |
rRNA | 15 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 3214 |
Cytoplasmic Membrane | 1606 |
Periplasmic | 243 |
Outer Membrane | 171 |
Extracellular | 86 |
Unknown | 1863 |
Unknown (This protein may have multiple localization sites) | 211 |
Flagellar | 27 |
Fimbrial | 4 |
T3SS | 5 |
Name | Length | GC | |
---|---|---|---|
Burkholderia contaminans strain MS14 chromosome 1, complete sequence. | 3522585 bp | 66.9% |
Replicon details
|
Burkholderia contaminans strain MS14 chromosome 2, complete sequence. | 3358952 bp | 66.3% |
Replicon details
|
Burkholderia contaminans strain MS14 chromosome 3, complete sequence. | 1627712 bp | 65.5% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |