Burkholderia cepacia MSMB616WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB616WGS
Species Burkholderia cepacia
Strain MSMB616WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7650
Partial Genes 161
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1599
gltB
386		 gyrB
1027		 phaC
487		 recA
103		 atpD
523		 trpB
21		 lepA
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001532125.1
Assembly Status latest
Scaffolds
Contigs 118
Contig N50 283079
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449614
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7650
CDS 7575
pseudo 175
tRNA 65
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3208
Cytoplasmic Membrane 1637
Periplasmic 261
Outer Membrane 183
Extracellular 101
Unknown 1943
Unknown (This protein may have multiple localization sites) 249
Flagellar 7
Fimbrial 5

Replicons

118 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF