| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia JBK9 |
| Species | Burkholderia cepacia |
| Strain | JBK9 |
| Description/Title | Microbe sample from Burkholderia cepacia JBK9 |
| Annotated Genes | 7437 |
| Partial Genes | 53 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | South Korea: Gyeongsangbuk-do |
| Isolation Source | garlic farming soil |
| Sample Provider | |
|---|---|
| Name | Byung Kwon Jung |
| bkjung@knu.ac.kr | |
| Institution | Kyungpook National University |
| Date Collected | 2011 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 1331 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02680268 |
| NCBI Taxonomy ID | 1395570 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia cepacia JBK9 chromosome 1, complete sequence. | |
| Burkholderia cepacia JBK9 chromosome 2, complete sequence. | |
| Burkholderia cepacia JBK9 chromosome 3, complete sequence. |
| Feature | Count |
|---|---|
| gene | 7437 |
| CDS | 7346 |
| pseudo | 89 |
| tRNA | 69 |
| rRNA | 18 |
| ncRNA | 3 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3219 |
| Cytoplasmic Membrane | 1580 |
| Periplasmic | 241 |
| Outer Membrane | 171 |
| Extracellular | 102 |
| Unknown | 1812 |
| Unknown (This protein may have multiple localization sites) | 226 |
| Flagellar | 23 |
| Fimbrial | 4 |
| T3SS | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cepacia JBK9 chromosome 1, complete sequence. | 3790084 bp | 66.6% |
Replicon details
|
| Burkholderia cepacia JBK9 chromosome 2, complete sequence. | 3400736 bp | 67.2% |
Replicon details
|
| Burkholderia cepacia JBK9 chromosome 3, complete sequence. | 1290392 bp | 66.4% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |