Burkholderia anthina MSMB649WGS

Strain Overview
Organism Name Burkholderia anthina MSMB649WGS
Species Burkholderia anthina
Strain MSMB649WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia anthina
Annotated Genes 6345
Partial Genes 100
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc -
lepA
~639		 gltB
~274		 trpB
205		 atpD
186		 recA
339		 phaC
295		 gyrB
~929
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001532915.1
Assembly Status latest
Scaffolds
Contigs 74
Contig N50 293788
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449619
NCBI Taxonomy ID 179879
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6345
CDS 6268
pseudo 101
tRNA 60
rRNA 12
ncRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2728
Cytoplasmic Membrane 1343
Periplasmic 220
Outer Membrane 156
Extracellular 98
Unknown 1546
Unknown (This protein may have multiple localization sites) 186
Flagellar 40
Fimbrial 9
T3SS 4

Replicons

74 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF