Burkholderia ambifaria AMMD

Strain Overview
Organism Name Burkholderia ambifaria AMMD
Species Burkholderia ambifaria
Strain AMMD
Subspecific Genetic Lineage
Description/Title Microbe sample Burkholderia ambifaria AMMD
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 6530
References
Partial Genes 34
Cross-References
NCBI BioSample Accession SAMN03140296
NCBI Biosample ID 3140296
NCBI Taxonomy ID 339670
GOLD Accession
NCBI Bioprojects
NCBI Sequencing Assay
NCBI Assembly
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6530
CDS 6441
tRNA 69
pseudo 54
rRNA 18
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2886
Cytoplasmic Membrane 1378
Periplasmic 223
Outer Membrane 154
Extracellular 88
Unknown 1543
Unknown (This protein may have multiple localization sites) 200
Flagellar 19
Fimbrial 8
T3SS 4
Sample Provider
Name Shannon Johnson
E-mail shannonj@lanl.gov
Institution Los Alamos National Laboratory
Date Collected 1985
Geographic Location
Location Name USA: Wisconsin
Isolation Source Pea rhizosphere
Host Information
Host Species Taxonomic Name

Replicons

Name Length GC
Burkholderia ambifaria AMMD chromosome 1, complete sequence. 3556555 bp 66.9%
Replicon details
Burkholderia ambifaria AMMD chromosome 2, complete sequence. 2646970 bp 66.8%
Replicon details
Burkholderia ambifaria AMMD chromosome 3, complete sequence. 1281472 bp 66.5%
Replicon details
Burkholderia ambifaria AMMD plasmid pBII_1, complete sequence. 43581 bp 65.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF

Download Intergenic Region Annotations

File also contains gene annotations

GTF