Strain Overview | |
---|---|
Organism Name | Burkholderia sp. RPE64 |
Species | Burkholderia sp. RPE64 |
Strain | RPE64 |
Description/Title | Burkholderia sp. RPE64 PacBio |
Annotated Genes | 6358 |
Partial Genes | 231 |
Host Information | |
---|---|
Host Species Taxonomic Name |
Geographic Location |
---|
Sample Provider | |
---|---|
Name | |
Institution | Division of Evolutionary Biology |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
---|---|---|---|---|
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMD00012854 |
NCBI Taxonomy ID | 758793 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
---|---|
gene | 6358 |
CDS | 6256 |
tRNA | 57 |
rRNA | 15 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 2861 |
Cytoplasmic Membrane | 1392 |
Periplasmic | 207 |
Outer Membrane | 114 |
Extracellular | 84 |
Unknown | 1459 |
Unknown (This protein may have multiple localization sites) | 139 |
Flagellar | 21 |
Fimbrial | 7 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |