Motif View

Internal ID 1761227
Source Database TransTermHP TERM 969
Feature Type terminator
Name
Rho-independent transcription terminator TERM 969
Sequence CCCCGCATGCTCCGGCATGCGGGG
Look for more occurrences
Start 3079648
End 3079671
Strand -
Genomic Context
Replicon Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCTGAAAAAACAAAA(5' tail) CCCCGCATGC(5' stem) CGGA(loop) GCATGCGGGG(3' stem) TTGGCCGACCGATGG(3' tail). Confidence: 100. opp_overlap 3079668

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685