Motif View

Internal ID 1761120
Source Database TransTermHP TERM 835
Feature Type terminator
Name
Rho-independent transcription terminator TERM 835
Sequence GCGCGCGGCCTGCCGCGCGC
Look for more occurrences
Start 2721381
End 2721400
Strand +
Genomic Context
Replicon Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCTGCTTCCCGAAA(5' tail) GCGCGCGG(5' stem) CCTG(loop) CCGCGCGC(3' stem) TTTTTGTTTTTCCGG(3' tail). Confidence: 100. opp_overlap 2721364 2721381, overlap 2721375

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685