Motif View

Internal ID 1585775
Source Database TransTermHP TERM 30
Feature Type terminator
Name
Rho-independent transcription terminator TERM 30
Sequence GCGCCCAGCCGGGCGC
Look for more occurrences
Start 115083
End 115098
Strand -
Genomic Context
Replicon Burkholderia cenocepacia K56-2Valvano ctg7180000002940C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGAGTGGTAAAAAAA(5' tail) GCGCCC(5' stem) GGCT(loop) GGGCGC(3' stem) TTTTTTGTTCGGAAG(3' tail). Confidence: 100. opp_overlap 115083

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL.
Genome Biol. 2007;8(2):R22.
PubMed ID: 17313685