Burkholderia ambifaria FDAARGOS_419

Strain Overview
Organism Name Burkholderia ambifaria FDAARGOS_419
Species Burkholderia ambifaria
Strain FDAARGOS_419
Description/Title Pathogen: environmental/food/other sample from Burkholderia ambifaria
Annotated Genes 6638
Partial Genes 153
Host Information
Host Species Taxonomic Name Environment
Host Species Sex Not Applicable
Host Species Age Not Applicable
Host Species Disease Not Applicable
Geographic Location
Isolation Source environmental
Latitude/Longitude Not Applicable
Sample Provider
Name USAMRIID
E-mail Heike.Sichtig@fda.hhs.gov
Institution US Food and Drug Administration
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 77
atpD
35		 gyrB
123		 phaC
59		 recA
98		 trpB
49		 lepA
103		 gltB
25
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_002554435.1
Assembly Status latest
Scaffolds
Contigs 4
Contig N50 2646963
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN07312463
NCBI Taxonomy ID 152480
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6638
CDS 6547
pseudo 252
tRNA 69
rRNA 18
ncRNA 3
tmRNA 1

Replicons

Name Length GC
Burkholderia ambifaria strain FDAARGOS_419 pRIID_52.contig.0, whole genome shotgun sequence. 43581 bp 65.8%
Replicon details
Burkholderia ambifaria strain FDAARGOS_419 pRIID_52.contig.1, whole genome shotgun sequence. 1281479 bp 66.5%
Replicon details
Burkholderia ambifaria strain FDAARGOS_419 pRIID_52.contig.2, whole genome shotgun sequence. 2646963 bp 66.8%
Replicon details
Burkholderia ambifaria strain FDAARGOS_419 pRIID_52.contig.3, whole genome shotgun sequence. 3575335 bp 66.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF